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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("curatedMetagenomicData")
In most cases, you don't need to download the package archive at all.
curatedMetagenomicData
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Curated Metagenomic Data of the Human Microbiome
Bioconductor version: Release (3.5)
The curatedMetagenomicData package provides microbial taxonomic, functional, and gene marker abundance for samples collected from different bodysites.
Author: Lucas Schiffer <schiffer.lucas at gmail.com>, Edoardo Pasolli <edoardo.pasolli at unitn.it>, Levi Waldron <lwaldron.research at gmail.com>, Faizan Malik <faizankmalik2012 at yahoo.com>, Nicola Segata <nicola.segata at unitn.it>, Valerie Obenchain <Valerie.Obenchain at roswellpark.org>, Morgan Martin <martin.morgan at roswellpark.org>
Maintainer: Lucas Schiffer <schiffer.lucas at gmail.com>
Citation (from within R,
enter citation("curatedMetagenomicData")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("curatedMetagenomicData")
Documentation
| HTML | R Script | curatedMetagenomicData |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | ExperimentData, Homo_sapiens_Data, MicrobiomeData, ReproducibleResearch |
| Version | 1.2.2 |
| License | Artistic-2.0 |
| Depends | R (>= 3.3.0), dplyr (>= 0.5.0), phyloseq(>= 1.18.0), Biobase(>= 2.34.0), ExperimentHub(>= 1.0.0), AnnotationHub(>= 2.6.0), magrittr |
| Imports | BiocInstaller, utils, tidyr, metagenomeSeq |
| LinkingTo | |
| Suggests | devtools, roxygen2, testthat, covr, knitr, rmarkdown, BiocCheck, BiocStyle, BiocInstaller, BiocParallel, readr, RISmed, ggplot2 |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/waldronlab/curatedMetagenomicData |
| BugReports | https://github.com/waldronlab/curatedMetagenomicData/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | curatedMetagenomicData_1.2.2.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/curatedMetagenomicData |
| Package Short Url | http://bioconductor.org/packages/curatedMetagenomicData/ |
| Package Downloads Report | Download Stats |
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