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DOI: 10.18129/B9.bioc.AnnotationHub    

Client to access AnnotationHub resources

Bioconductor version: Release (3.5)

This package provides a client for the Bioconductor AnnotationHub web resource. The AnnotationHub web resource provides a central location where genomic files (e.g., VCF, bed, wig) and other resources from standard locations (e.g., UCSC, Ensembl) can be discovered. The resource includes metadata about each resource, e.g., a textual description, tags, and date of modification. The client creates and manages a local cache of files retrieved by the user, helping with quick and reproducible access.

Author: Martin Morgan [cre], Marc Carlson [ctb], Dan Tenenbaum [ctb], Sonali Arora [ctb]

Maintainer: Bioconductor Package Maintainer <maintainer at>

Citation (from within R, enter citation("AnnotationHub")):


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## try http:// if https:// URLs are not supported


HTML R Script AnnotationHub: Access the AnnotationHub Web Service
HTML R Script AnnotationHub: AnnotationHub HOW TO's
PDF   Reference Manual
Text   NEWS


biocViews DataImport, GUI, Infrastructure, Software, ThirdPartyClient
Version 2.8.3
In Bioconductor since BioC 2.12 (R-3.0) (4.5 years)
License Artistic-2.0
Depends BiocGenerics(>= 0.15.10)
Imports utils, methods, grDevices, RSQLite, BiocInstaller, AnnotationDbi(>= 1.31.19), S4Vectors, interactiveDisplayBase, httr, yaml
Suggests IRanges, GenomicRanges, GenomeInfoDb, VariantAnnotation, Rsamtools, rtracklayer, BiocStyle, knitr, AnnotationForge, rBiopaxParser, RUnit, GenomicFeatures, MSnbase, mzR, Biostrings, SummarizedExperiment, ExperimentHub
Enhances AnnotationHubData
Depends On Me AnnotationHubData, curatedMetagenomicData, ExperimentHub, ProteomicsAnnotationHubData, RefNet
Imports Me alpineData, alternativeSplicingEvents.hg19, annotatr, ensembldb, GenomicScores, grasp2db, gwascat, psichomics, pwOmics, REMP, TSRchitect
Suggests Me AHEnsDbs, Chicago, CINdex, clusterProfiler, DNAshapeR, dupRadar, epiNEM, GenomicRanges, GOSemSim, MSnbase, OrganismDbi, Pbase, VariantAnnotation
Build Report  

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Source Package AnnotationHub_2.8.3.tar.gz
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Mac OS X 10.11 (El Capitan) AnnotationHub_2.8.3.tgz
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