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This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see graph.

graph: A package to handle graph data structures

Bioconductor version: 3.2

A package that implements some simple graph handling capabilities.

Author: R. Gentleman, Elizabeth Whalen, W. Huber, S. Falcon

Maintainer: Bioconductor Package Maintainer <maintainer at>

Citation (from within R, enter citation("graph")):


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PDF Attributes for Graph Objects
PDF clusterGraph and distGraph
PDF Graph
PDF Graph Design
PDF graphBAM and MultiGraph classes
PDF   Reference Manual


biocViews GraphAndNetwork, Software
Version 1.48.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 11 years)
License Artistic-2.0
Depends R (>= 2.10), methods
Imports stats, stats4, tools, utils, BiocGenerics(>= 0.13.11)
Suggests SparseM (>= 0.36), XML, RBGL, RUnit, cluster
Enhances Rgraphviz
Depends On Me apComplex, biocGraph, BioMVCClass, BioNet, CellNOptR, clipper, CNORfeeder, ddgraph, FEM, flowClust, flowMerge, gaggle, gaucho, GeneNetworkBuilder, GOFunction, GOstats, GraphAT, GSEABase, hypergraph, keggorthology, maigesPack, MineICA, NCIgraph, NetSAM, pathRender, pkgDepTools, ppiData, RbcBook1, RBGL, RBioinf, RCy3, RCyjs, RCytoscape, RDAVIDWebService, Rgraphviz, ROntoTools, RpsiXML, SNAData, SRAdb, ToPASeq, topGO, vtpnet, yeastExpData
Imports Me AnalysisPageServer, BiocCheck, biocGraph, biocViews, CAMERA, Category, categoryCompare, ChIPpeakAnno, DEGraph, EnrichmentBrowser, FEM, flowCore, flowUtils, flowWorkspace, gage, GeneNetworkBuilder, GOFunction, GOSim, GOstats, GraphAT, graphite, gwascat, HTSanalyzeR, hyperdraw, KEGGgraph, keggorthology, keggorthology, mirIntegrator, mvGST, NCIgraph, nem, netresponse, OncoSimulR, openCyto, OrganismDbi, pathview, PCpheno, pkgDepTools, ppiStats, qpgraph, RamiGO, RchyOptimyx, rsbml, Rtreemix, SplicingGraphs, Streamer, topGO, VariantFiltering
Suggests Me AnnotationDbi, BiocCaseStudies, Category, DEGraph, EBcoexpress, ecolitk, GeneAnswers, mmnet, MmPalateMiRNA, netbenchmark, NetPathMiner, rBiopaxParser, rTRM, SPIA, VariantTools
Build Report  

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Mac OS X 10.9 (Mavericks) graph_1.48.0.tgz
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