To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RDAVIDWebService")

In most cases, you don't need to download the package archive at all.

RDAVIDWebService

   

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see RDAVIDWebService.

An R Package for retrieving data from DAVID into R objects using Web Services API.

Bioconductor version: 3.2

Tools for retrieving data from the Database for Annotation, Visualization and Integrated Discovery (DAVID) using Web Services into R objects. This package offers the main functionalities of DAVID website including: i) user friendly connectivity to upload gene/background list/s, change gene/background position, select current specie/s, select annotations, etc. ii) Reports of the submitted Gene List, Annotation Category Summary, Gene/Term Clusters, Functional Annotation Chart, Functional Annotation Table

Author: Cristobal Fresno and Elmer A. Fernandez

Maintainer: Cristobal Fresno <cfresno at bdmg.com.ar>

Citation (from within R, enter citation("RDAVIDWebService")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RDAVIDWebService")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RDAVIDWebService")

 

PDF RDAVIDWebService: a versatile R interface to DAVID
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, GraphAndNetwork, Software, Visualization
Version 1.8.0
In Bioconductor since BioC 2.13 (R-3.0) (2.5 years)
License GPL (>=2)
Depends R (>= 2.14.1), methods, graph, GOstats, ggplot2
Imports Category, GO.db, RBGL, rJava
LinkingTo
Suggests Rgraphviz
SystemRequirements
Enhances
URL http://www.bdmg.com.ar http://david.abcc.ncifcrf.gov/
Depends On Me CompGO
Imports Me
Suggests Me clusterProfiler, FGNet
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source RDAVIDWebService_1.8.0.tar.gz
Windows Binary RDAVIDWebService_1.8.0.zip
Mac OS X 10.6 (Snow Leopard) RDAVIDWebService_1.8.0.tgz
Mac OS X 10.9 (Mavericks) RDAVIDWebService_1.8.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/RDAVIDWebService/tree/release-3.2
Package Short Url http://bioconductor.org/packages/RDAVIDWebService/
Package Downloads Report Download Stats

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