altcdfenvs

DOI: 10.18129/B9.bioc.altcdfenvs    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see altcdfenvs.

alternative CDF environments (aka probeset mappings)

Bioconductor version: 3.15

Convenience data structures and functions to handle cdfenvs

Author: Laurent Gautier <lgautier at gmail.com>

Maintainer: Laurent Gautier <lgautier at gmail.com>

Citation (from within R, enter citation("altcdfenvs")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("altcdfenvs")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("altcdfenvs")

 

PDF R Script altcdfenvs
PDF R Script Alternative CDF environments for 2(or more)-genomes chips
PDF R Script Modifying existing CDF environments to make alternative CDF environments
PDF   Reference Manual

Details

biocViews Annotation, Microarray, OneChannel, Preprocessing, ProprietaryPlatforms, QualityControl, Software, Transcription
Version 2.58.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 17.5 years)
License GPL (>= 2)
Depends R (>= 2.7), methods, BiocGenerics(>= 0.1.0), S4Vectors(>= 0.9.25), Biobase(>= 2.15.1), affy, makecdfenv, Biostrings, hypergraph
Imports
LinkingTo
Suggests plasmodiumanophelescdf, hgu95acdf, hgu133aprobe, hgu133a.db, hgu133acdf, Rgraphviz, RColorBrewer
SystemRequirements
Enhances
URL
Depends On Me
Imports Me Harshlight
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package altcdfenvs_2.58.0.tar.gz
Windows Binary altcdfenvs_2.58.0.zip
macOS Binary (x86_64) altcdfenvs_2.58.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/altcdfenvs
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/altcdfenvs
Package Short Url https://bioconductor.org/packages/altcdfenvs/
Package Downloads Report Download Stats

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