DOI: 10.18129/B9.bioc.PubScore    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.15 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see PubScore .

Automatic calculation of literature relevance of genes

Bioconductor version: 3.15

Calculates the importance score for a given gene. The importance score is the total counts of articles in the pubmed database that are a result for that gene AND each term of a list.

Author: Tiago Lubiana [aut, cre], Helder Nakaya [aut, ths]

Maintainer: Tiago Lubiana <tiago.lubiana.alves at>

Citation (from within R, enter citation("PubScore")):


To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


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biocViews BiomedicalInformatics, Epigenetics, GeneExpression, GeneSetEnrichment, Genetics, SingleCell, Software, SystemsBiology, Visualization
Version 1.8.0
In Bioconductor since BioC 3.11 (R-4.0) (2.5 years)
License MIT + file LICENSE
Depends R (>= 4.0.0)
Imports ggplot2, igraph, ggrepel, rentrez, progress, graphics, dplyr, utils, methods, intergraph, network, sna
Suggests FCBF, plotly, SummarizedExperiment, SingleCellExperiment, knitr, rmarkdown, testthat (>= 2.1.0), BiocManager, biomaRt
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Source Package PubScore_1.8.0.tar.gz
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