cgdv17

DOI: 10.18129/B9.bioc.cgdv17    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see cgdv17.

Complete Genomics Diversity Panel, chr17 on 46 individuals

Bioconductor version: 3.10

Complete Genomics Diversity Panel, chr17 on 46 individuals

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("cgdv17")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cgdv17")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cgdv17")

 

PDF R Script cgdv17: extract from Complete Genomics diversity panel
PDF   Reference Manual

Details

biocViews BiocViews, ExperimentData, SNPData, SequencingData
Version 0.24.0
License Artistic-2.0
Depends R (>= 2.15), methods, VariantAnnotation(>= 1.15.15)
Imports BiocGenerics, S4Vectors, IRanges, GenomicRanges, Biobase
LinkingTo
Suggests parallel, GGtools, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, illuminaHumanv1.db
SystemRequirements
Enhances
URL
Depends On Me variants
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package cgdv17_0.24.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/cgdv17
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/cgdv17
Package Short Url https://bioconductor.org/packages/cgdv17/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: