DOI: 10.18129/B9.bioc.scTensor    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see scTensor.

Detection of cell-cell interaction from single-cell RNA-seq dataset by tensor decomposition

Bioconductor version: 3.10

The algorithm is based on the non-negative tucker decomposition (NTD2) of nnTensor.

Author: Koki Tsuyuzaki [aut, cre], Kozo Nishida [aut]

Maintainer: Koki Tsuyuzaki <k.t.the-answer at>

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HTML R Script scTensor
HTML R Script scTensor: 1. Data format and ID conversion
HTML R Script scTensor: 2. Interpretation of HTML report
HTML R Script scTensor: 3. Simulation of CCI
HTML R Script scTensor: 4. Reanalysis of the results of scTensor
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biocViews DimensionReduction, GeneExpression, SingleCell, Software
Version 1.2.1
In Bioconductor since BioC 3.9 (R-3.6) (1 year)
License Artistic-2.0
Depends R (>= 3.5.0)
Imports methods, RSQLite, igraph, S4Vectors, plotly, reactome.db, AnnotationDbi, SummarizedExperiment, SingleCellExperiment, nnTensor, rTensor, abind, plotrix, heatmaply, tagcloud, rmarkdown, BiocStyle, knitr, AnnotationHub, MeSHDbi, grDevices, graphics, stats, utils, outliers, Category, meshr, GOstats, ReactomePA, DOSE, crayon, checkmate, BiocManager, visNetwork
Suggests testthat,,,,, LRBaseDbi, Seurat, Homo.sapiens
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