DOI: 10.18129/B9.bioc.SNPchip    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see SNPchip.

Visualizations for copy number alterations

Bioconductor version: 3.10

Functions for plotting SNP array data; maintained for historical reasons

Author: Robert Scharpf <rscharpf at> and Ingo Ruczinski

Maintainer: Robert Scharpf <rscharpf at>

Citation (from within R, enter citation("SNPchip")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script Plotting Idiograms
PDF   Reference Manual


biocViews CopyNumberVariation, GeneticVariability, SNP, Software, Visualization
Version 2.32.0
In Bioconductor since BioC 2.0 (R-2.5) (13 years)
License LGPL (>= 2)
Depends R (>= 2.14.0)
Imports methods, graphics, lattice, grid, foreach, utils, Biobase, S4Vectors(>= 0.9.25), IRanges, GenomeInfoDb, GenomicRanges, SummarizedExperiment, oligoClasses(>= 1.31.1)
Suggests crlmm(>= 1.17.14), RUnit
Enhances doSNOW, VanillaICE(>= 1.21.24), RColorBrewer
Depends On Me mBPCR
Imports Me crlmm, phenoTest
Suggests Me MinimumDistance, oligoClasses, VanillaICE
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SNPchip_2.32.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) SNPchip_2.32.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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