IMMAN

DOI: 10.18129/B9.bioc.IMMAN    

This is the development version of IMMAN; to use it, please install the devel version of Bioconductor.

Interlog protein network reconstruction by Mapping and Mining ANalysis

Bioconductor version: Development (3.10)

Reconstructing Interlog Protein Network (IPN) integrated from several Protein protein Interaction Networks (PPINs). Using this package, overlaying different PPINs to mine conserved common networks between diverse species will be applicable.

Author: Minoo Ashtiani, Payman Nickchi, Abdollah Safari, Mehdi Mirzaie, Mohieddin Jafari

Maintainer: Minoo Ashtiani <ashtiani.minoo at gmail.com>

Citation (from within R, enter citation("IMMAN")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("IMMAN")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("IMMAN")

 

HTML R Script IMMAN
PDF   Reference Manual

Details

biocViews Alignment, GraphAndNetwork, Network, Proteomics, SequenceMatching, Software, SystemsBiology
Version 1.5.0
In Bioconductor since BioC 3.7 (R-3.5) (1.5 years)
License Artistic-2.0
Depends
Imports STRINGdb, Biostrings, igraph, graphics, utils, seqinr
LinkingTo
Suggests knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package IMMAN_1.5.0.tar.gz
Windows Binary IMMAN_1.5.0.zip
Mac OS X 10.11 (El Capitan) IMMAN_1.5.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/IMMAN
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/IMMAN
Package Short Url https://bioconductor.org/packages/IMMAN/
Package Downloads Report Download Stats

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