survcomp

Performance Assessment and Comparison for Survival Analysis

Bioconductor version: 2.9

R package providing functions to assess and to compare the performance of risk prediction (survival) models.

Author: Benjamin Haibe-Kains, Markus Schroeder, Christos Sotiriou, Gianluca Bontempi, John Quackenbush

Maintainer: Benjamin Haibe-Kains <bhaibeka at jimmy.harvard.edu>, Markus Schroeder <mschroed at jimmy.harvard.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("survcomp")

To cite this package in a publication, start R and enter:

    citation("survcomp")

Documentation

PDF R Script survcomp: a package for performance assessment and comparison for survival analysis
PDF   Reference Manual

Details

biocViews GeneExpression, DifferentialExpression, Visualization
Depends survival, grid, rmeta, KernSmooth, bootstrap, survivalROC, R (>= 2.10)
Imports ipred, prodlim, SuppDists, KernSmooth
Suggests Biobase, CPE, Hmisc, SuppDists, clinfun, ipred, prodlim, survJamda, xtable
System Requirements
License Artistic-2.0
URL http://compbio.dfci.harvard.edu
Depends On Me genefu
Imports Me
Suggests Me breastCancerMAINZ, breastCancerNKI, breastCancerTRANSBIG, breastCancerUNT, breastCancerUPP, breastCancerVDX
Version 1.4.0
Since Bioconductor 2.8 (R-2.13)

Package Downloads

Package Source survcomp_1.4.0.tar.gz
Windows Binary survcomp_1.4.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary survcomp_1.4.0.tgz
Package Downloads Report Download Stats

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