genefu

Relevant Functions for Gene Expression Analysis, Especially in Breast Cancer.

Bioconductor version: 2.9

This package contains functions implementing various tasks usually required by gene expression analysis, especially in breast cancer studies: gene mapping between different microarray platforms, identification of molecular subtypes, implementation of published gene signatures, gene selection, survival analysis, ...

Author: Benjamin Haibe-Kains, Markus Schroeder, Gianluca Bontempi, Christos Sotiriou, John Quackenbush

Maintainer: Benjamin Haibe-Kains <bhaibeka at jimmy.harvard.edu>, Markus Schroeder <mschroed at jimmy.harvard.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("genefu")

To cite this package in a publication, start R and enter:

    citation("genefu")

Documentation

PDF	R Script	genefu An Introduction (HowTo)
PDF		Reference Manual
Text		README

Details

biocViews	DifferentialExpression, GeneExpression, Visualization, Clustering, Classification
Depends	survcomp, mclust
Imports	amap
Suggests	GeneMeta, breastCancerVDX, breastCancerMAINZ, breastCancerTRANSBIG, breastCancerUPP, breastCancerUNT, breastCancerNKI
System Requirements
License	Artistic-2.0
URL	http://compbio.dfci.harvard.edu
Depends On Me
Imports Me
Suggests Me	breastCancerMAINZ, breastCancerNKI, breastCancerTRANSBIG, breastCancerUNT, breastCancerUPP, breastCancerVDX
Version	1.4.0
Since	Bioconductor 2.8 (R-2.13)

Package Downloads

Package Source	genefu_1.4.0.tar.gz
Windows Binary	genefu_1.4.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	genefu_1.4.0.tgz
Package Downloads Report	Download Stats

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