simpIntLists

The package contains BioGRID interactions for various organisms in a simple format

Bioconductor version: 2.8

The package contains BioGRID interactions for arabidopsis(thale cress), c.elegans, fruit fly, human, mouse, yeast( budding yeast ) and S.pombe (fission yeast) . Entrez ids, official names and unique ids can be used to find proteins. The format of interactions are lists. For each gene/protein, there is an entry in the list with "name" containing name of the gene/protein and "interactors" containing the list of genes/proteins interacting with it.

Author: Kircicegi Korkmaz, Volkan Atalay, Rengul Cetin-Atalay

Maintainer: Kircicegi Korkmaz <e102771 at ceng.metu.edu.tr>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("simpIntLists")

To cite this package in a publication, start R and enter:

    citation("simpIntLists")

Documentation

PDF R Script simpIntLists
PDF   Reference Manual

Details

biocViews ExperimentData
Depends
Imports
Suggests
System Requirements
License GPL (>= 2)
URL
Depends On Me ibh
Imports Me
Suggests Me
Version 0.99.0

Package Downloads

Package Source simpIntLists_0.99.0.tar.gz
Windows Binary simpIntLists_0.99.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary simpIntLists_0.99.0.tgz
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