ibh

Interaction Based Homogeneity for Evaluating Gene Lists

Bioconductor version: 2.8

This package contains methods for calculating Interaction Based Homogeneity to evaluate fitness of gene lists to an interaction network which is useful for evaluation of clustering results and gene list analysis. BioGRID interactions are used in the calculation. The user can also provide their own interactions.

Author: Kircicegi Korkmaz, Volkan Atalay, Rengul Cetin Atalay.

Maintainer: Kircicegi Korkmaz <e102771 at ceng.metu.edu.tr>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ibh")

To cite this package in a publication, start R and enter:

    citation("ibh")

Documentation

PDF R Script ibh
PDF   Reference Manual

Details

biocViews QualityControl, DataImport, GraphsAndNetworks, Bioinformatics
Depends simpIntLists
Imports
Suggests yeastCC, stats
System Requirements
License GPL (>= 2)
URL
Depends On Me
Imports Me
Suggests Me
Version 1.0.0
Since Bioconductor 2.8 (R-2.13)

Package Downloads

Package Source ibh_1.0.0.tar.gz
Windows Binary ibh_1.0.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary ibh_1.0.0.tgz
Package Downloads Report Download Stats

Workflows »

Common Bioconductor workflows include:

 

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center