mosaicsExample

Example data for the mosaics package, which implements MOSAiCS, a statistical framework to analyze one-sample or two-sample ChIP-seq data

Bioconductor version: 2.8

Data for the mosaics package, consisting of chromosome 21 ChIP and control sample data from a ChIP-seq experiment of STAT1 binding, with mappability, GC content, and sequence ambiguity scores of human genome HG18.

Author: Dongjun Chung, Pei Fen Kuan, Sunduz Keles

Maintainer: Dongjun Chung <chungdon at stat.wisc.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("mosaicsExample")

To cite this package in a publication, start R and enter:

    citation("mosaicsExample")

Documentation

PDF   Reference Manual

Details

biocViews ExperimentData, ChIPseqData, Homo_sapiens
Depends R (>= 2.11.1)
Imports
Suggests
System Requirements
License GPL (>= 2)
URL http://groups.google.com/group/mosaics_user_group
Depends On Me
Imports Me
Suggests Me mosaics
Version 0.99.3

Package Downloads

Package Source mosaicsExample_0.99.3.tar.gz
Windows Binary mosaicsExample_0.99.3.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary mosaicsExample_0.99.3.tgz
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