mosaics

MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)

Bioconductor version: 2.8

This package provides functions for fitting MOSAiCS, a statistical framework to analyze one-sample or two-sample ChIP-seq data.

Author: Dongjun Chung, Pei Fen Kuan, Sunduz Keles

Maintainer: Dongjun Chung <chungdon at stat.wisc.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("mosaics")

To cite this package in a publication, start R and enter:

    citation("mosaics")

Documentation

PDF R Script MOSAiCS
PDF   Reference Manual

Details

biocViews ChIPseq, Sequencing, Transcription, Genetics, Bioinformatics
Depends R (>= 2.11.1), methods, graphics
Imports MASS, splines, lattice, IRanges
Suggests mosaicsExample, rtracklayer, cosmo
System Requirements
License GPL (>= 2)
URL http://groups.google.com/group/mosaics_user_group
Depends On Me
Imports Me
Suggests Me
Version 1.0.1
Since Bioconductor 2.8 (R-2.13)

Package Downloads

Package Source mosaics_1.0.1.tar.gz
Windows Binary mosaics_1.0.1.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary mosaics_1.0.1.tgz
Package Downloads Report Download Stats

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