genefu

Relevant Functions for Gene Expression Analysis, Especially in Breast Cancer.

Bioconductor version: 2.8

This package contains functions implementing various tasks usually required by gene expression analysis, especially in breast cancer studies: gene mapping between different microarray platforms, identification of molecular subtypes, implementation of published gene signatures, gene selection, survival analysis, ...

Author: Benjamin Haibe-Kains, Markus Schroeder, Aedin Culhane, Gianluca Bontempi, Christos Sotiriou, John Quackenbush

Maintainer: Benjamin Haibe-Kains <bhaibeka at jimmy.harvard.edu>, Markus Schroeder <mschroed at jimmy.harvard.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("genefu")

To cite this package in a publication, start R and enter:

    citation("genefu")

Documentation

PDF R Script genefu An Introduction (HowTo)
PDF   Reference Manual

Details

biocViews DifferentialExpression, GeneExpression, Visualization, Clustering, Classification
Depends survcomp, mclust
Imports amap, gplots
Suggests GeneMeta
System Requirements
License Artistic-2.0
URL http://compbio.dfci.harvard.edu
Depends On Me
Imports Me
Suggests Me breastCancerMAINZ, breastCancerNKI, breastCancerTRANSBIG, breastCancerUNT, breastCancerUPP, breastCancerVDX
Version 1.2.1
Since Bioconductor 2.8 (R-2.13)

Package Downloads

Package Source genefu_1.2.1.tar.gz
Windows Binary genefu_1.2.1.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary genefu_1.2.1.tgz
Package Downloads Report Download Stats

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