clusterProfiler

statistical analysis and visulization of functional profiles for genes and gene clusters

Bioconductor version: 2.8

The package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.

Author: Guangchuang Yu

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("clusterProfiler")

To cite this package in a publication, start R and enter:

    citation("clusterProfiler")

Documentation

PDF R Script An introduction to clusterProfiler
PDF   Reference Manual

Details

biocViews Bioinformatics, Clustering, GO, Pathways, Visualization, MultipleComparisons
Depends stats, plyr, ggplot2
Imports methods, qvalue, AnnotationDbi, GO.db, KEGG.db, org.Hs.eg.db, org.Mm.eg.db, org.Sc.sgd.db
Suggests GOSemSim
System Requirements
License Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me GOSemSim
Version 1.0.6
Since Bioconductor 2.8 (R-2.13)

Package Downloads

Package Source clusterProfiler_1.0.6.tar.gz
Windows Binary clusterProfiler_1.0.6.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary clusterProfiler_1.0.6.tgz
Package Downloads Report Download Stats

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