RNAither

Statistical analysis of high-throughput RNAi screens

Bioconductor version: 2.8

RNAither analyzes cell-based RNAi screens, and includes quality assessment, customizable normalization and statistical tests, leading to lists of significant genes and biological processes.

Author: Nora Rieber and Lars Kaderali, University of Heidelberg, Viroquant Research Group Modeling, Im Neuenheimer Feld 267, 69120 Heidelberg, Germany

Maintainer: Nora Rieber <RNAither at gmx.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("RNAither")

To cite this package in a publication, start R and enter:

    citation("RNAither")

Documentation

PDF R Script RNAither, an automated pipeline for the statistical analysis of high-throughput RNAi screens
PDF   Reference Manual

Details

biocViews CellBasedAssays, QualityControl, Preprocessing, Visualization, Bioinformatics, Annotation, GO
Depends R (>= 2.7.0), topGO, RankProd, prada
Imports geneplotter, limma, biomaRt, car, splots, methods
Suggests
System Requirements
License Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me
Version 2.0.0
Since Bioconductor 2.3 (R-2.8)

Package Downloads

Package Source RNAither_2.0.0.tar.gz
Windows Binary RNAither_2.0.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary RNAither_2.0.0.tgz
Package Downloads Report Download Stats

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