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Managing alignment tallies using a hdf5 backend

Bioconductor version: 2.13

This package contains functions to interact with tally data from NGS experiments that is stored in HDF5 files. For detail see the webpage at

Author: Paul Theodor Pyl

Maintainer: Paul Theodor Pyl <pyl at>

Citation (from within R, enter citation("h5vc")):


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HTML R Script Advanced analyses
HTML R Script Building a minimal genome browser with h5vc and shiny
HTML Creating Tallies with h5py/Python
HTML R Script Creating Tallies within R
HTML R Script Scalable nucleotide tallies with HDF5
PDF   Reference Manual


biocViews Software
Version 1.0.6
In Bioconductor since BioC 2.13 (R-3.0)
License GPL (>= 3)
Imports rhdf5, ggplot2, reshape, bit64, IRanges, GenomicRanges, Biostrings
Suggests knitr, locfit, deepSNV, BSgenome.Hsapiens.UCSC.hg19, h5vcData
System Requirements
Depends On Me
Imports Me
Suggests Me h5vcData

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