h5vc-package | Managing alignment tallies using a hdf5 backend |
bases | Mutation spectrum analyses |
binnedCoverage | Coverage analysis |
callDeletionsPaired | Variant calling |
callVariantsPaired | Variant calling |
encodeDNAString | helper functions |
formatGenomicPosition | helper functions |
geom_h5vc | geom_h5vc |
getSampleData | Extracting sample data from a tally file |
h5dapply | h5dapply |
h5vc | Managing alignment tallies using a hdf5 backend |
mismatchPlot | mismatchPlot |
mutationSpectrum | Mutation spectrum analyses |
setSampleData | Extracting sample data from a tally file |
variantCalls | Mutation spectrum analyses |
vcConfParams | Variant calling |