source("http://bioconductor.org/biocLite.R")
biocLite("ggbio")

ggbio

Visualization tools for genomic data.

Bioconductor version: 2.13

The ggbio package extends and specializes the grammar of graphics for biological data. The graphics are designed to answer common scientific questions, in particular those often asked of high throughput genomics data. All core Bioconductor data structures are supported, where appropriate. The package supports detailed views of particular genomic regions, as well as genome-wide overviews. Supported overviews include ideograms and grand linear views. High-level plots include sequence fragment length, edge-linked interval to data view, mismatch pileup, and several splicing summaries.

Author: Tengfei Yin, Dianne Cook, Michael Lawrence

Maintainer: Tengfei Yin <yintengfei at gmail.com>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ggbio")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ggbio")

 

PDF	R Script	Part 0: Introduction and quick start
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, Infrastructure, Software, Visualization
Version	1.10.16
In Bioconductor since	BioC 2.9 (R-2.14)
License	Artistic-2.0
Depends	methods, ggplot2 (>= 0.9.3)
Imports	methods, biovizBase(>= 1.10.5), reshape2, gtable, ggplot2 (>= 0.9.2), lattice, BiocGenerics, Biobase, IRanges, GenomicRanges(>= 1.13.3), GenomicFeatures, Rsamtools(>= 1.13.1), BSgenome, gridExtra, scales, plyr, VariantAnnotation, Hmisc, rtracklayer
Suggests	vsn, RUnit, testthat, BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene, affyPLM, chipseq, TxDb.Mmusculus.UCSC.mm9.knownGene, knitr
System Requirements
URL	http://tengfei.github.com/ggbio/
Depends On Me	intansv
Imports Me	ReportingTools
Suggests Me	gwascat, ReportingTools, SomaticCancerAlterations

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	ggbio_1.10.16.tar.gz
Windows Binary	ggbio_1.10.16.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	ggbio_1.10.16.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats