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multivariate outlier detection for expression array QA

Bioconductor version: 2.13

This package supports the application of diverse quality metrics to AffyBatch instances, summarizing these metrics via PCA, and then performing parametric outlier detection on the PCs to identify aberrant arrays with a fixed Type I error rate

Author: Z. Gao, A. Asare, R. Wang, V. Carey

Maintainer: V. Carey <stvjc at>

Citation (from within R, enter citation("arrayMvout")):


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PDF R Script arrayMvout -- multivariate outlier algorithm for expression arrays
PDF arrayMvout-asdad.pdf
PDF arrayMvout-lkadas.pdf
PDF arrayMvout-lkda.pdf
PDF   Reference Manual


biocViews Bioinformatics, Infrastructure, Microarray, QualityControl, Software
Version 1.20.0
In Bioconductor since BioC 2.3 (R-2.8)
License Artistic-2.0
Depends R (>= 2.6.0), tools, methods, utils, parody, Biobase, affy, lumi
Imports simpleaffy, mdqc, affyContam
Suggests MAQCsubset, mvoutData, lumiBarnes, affyPLM, affydata, hgu133atagcdf
System Requirements
Depends On Me
Imports Me
Suggests Me

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