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Representation and manpulation of external sequences

Bioconductor version: 2.13

Memory efficient S4 classes for storing sequences "externally" (behind an R external pointer, or on disk).

Author: H. Pages and P. Aboyoun

Maintainer: H. Pages <hpages at>

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biocViews DataRepresentation, Infrastructure, Software
Version 0.2.0
In Bioconductor since BioC 2.13 (R-3.0)
License Artistic-2.0
Depends R (>= 2.8.0), methods, BiocGenerics(>= 0.7.2), IRanges(>= 1.19.36)
Imports methods, BiocGenerics, IRanges
Suggests Biostrings, drosophila2probe, RUnit
System Requirements
Depends On Me Biostrings, DECIPHER, GenomicRanges, motifRG, Rsamtools, rSFFreader, triplex, VariantAnnotation
Imports Me Biostrings, ChIPsim, DECIPHER, gcrma, Gviz, motifRG, R453Plus1Toolbox, rSFFreader, rtracklayer, VariantAnnotation
Suggests Me IRanges

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