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Plotting data and annotation information along genomic coordinates

Bioconductor version: 2.13

Genomic data analyses requires integrated visualization of known genomic information and new experimental data. Gviz uses the biomaRt and the rtracklayer packages to perform live annotation queries to Ensembl and UCSC and translates this to e.g. gene/transcript structures in viewports of the grid graphics package. This results in genomic information plotted together with your data.

Author: Florian Hahne, Steffen Durinck, Robert Ivanek, Arne Mueller, Steve Lianoglou, Ge Tan <ge.tan09 at>

Maintainer: Florian Hahne <florian.hahne at>

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PDF R Script Gviz users guide
PDF ucsc1.pdf
PDF ucsc2.pdf
PDF   Reference Manual
Text   NEWS


biocViews Microarray, Software, Visualization
Version 1.6.0
In Bioconductor since BioC 2.10 (R-2.15)
License Artistic-2.0
Depends R (>= 2.10.0), methods, grid
Imports IRanges(>= 1.19.5), XVector, rtracklayer(>= 1.15.5), lattice, RColorBrewer, biomaRt(>= 2.11.0), GenomicRanges(>= 1.7.14), AnnotationDbi(>= 1.17.11), Biobase(>= 2.15.3), BiocGenerics(>= 0.1.4), GenomicFeatures(>= 1.9.7), BSgenome(>= 1.25.1), Biostrings(>= 2.25.1), biovizBase(>= 1.5.7), Rsamtools(>= 1.11.1), latticeExtra (>= 0.6-26)
Suggests xtable, GenomicFeatures, BSgenome.Hsapiens.UCSC.hg19, biomaRt, rtracklayer
System Requirements
Depends On Me biomvRCNS, cummeRbund
Imports Me interactiveDisplay, methyAnalysis, PING
Suggests Me gwascat, QuasR, SplicingGraphs

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