source("http://bioconductor.org/biocLite.R")
biocLite("GGtools")

GGtools

software and data for analyses in genetics of gene expression

Bioconductor version: 2.13

software and data for analyses in genetics of gene expression and/or DNA methylation

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("GGtools")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GGtools")

 

PDF	R Script	GGtools: software for eQTL identification
PDF		Reference Manual
Text		README
Text		NEWS

Details

biocViews	GeneExpression, GeneticVariability, Genetics, SNP, Software
Version	4.10.0
In Bioconductor since	BioC 1.9 (R-2.4)
License	Artistic-2.0
Depends	R (>= 2.14), stats4, GGBase(>= 3.19.7), IRanges, GenomicRanges, Rsamtools
Imports	methods, utils, stats, BiocGenerics, snpStats, ff, AnnotationDbi, Biobase, bit, VariantAnnotation
Suggests	GGdata, illuminaHumanv1.db, SNPlocs.Hsapiens.dbSNP.20120608
System Requirements
URL
Depends On Me	ceu1kg, cgdv17, cheung2010, encoDnaseI, ggtut
Imports Me	ceuhm3
Suggests Me	hmyriB36, ind1KG

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	GGtools_4.10.0.tar.gz
Windows Binary	GGtools_4.10.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	GGtools_4.10.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats