SNPlocs.Hsapiens.dbSNP.20101109

SNP locations for Homo sapiens (dbSNP Build 132)

Bioconductor version: Release (2.12)

SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 132. The source data files used for this package were created by NCBI on 9 November 2010 and contain SNPs mapped to reference genome GRCh37. WARNING: Note that the GRCh37 genome is the same as the hg19 genome from UCSC except for the mitochondrion chromosome. Therefore, the SNPs in this package can be "injected" in BSgenome.Hsapiens.UCSC.hg19 but this injection will exclude chrM (i.e. nothing will be injected in that sequence).

Author: Herve Pages

Maintainer: H. Pages <hpages at fhcrc.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("SNPlocs.Hsapiens.dbSNP.20101109")

To cite this package in a publication, start R and enter:

    citation("SNPlocs.Hsapiens.dbSNP.20101109")

Documentation


PDF		Reference Manual

Details

biocViews	AnnotationData, Genetics, Homo_sapiens
Version	0.99.6
License	Artistic-2.0
Depends	R (>= 2.10), IRanges, GenomicRanges
Imports	methods, IRanges, GenomicRanges
Suggests	Biostrings, BSgenome(>= 1.16.1), BSgenome.Hsapiens.UCSC.hg19
System Requirements
URL
Depends On Me
Imports Me
Suggests Me	ceu1kg, cheung2010, VariantAnnotation

Package Downloads

Package Source	SNPlocs.Hsapiens.dbSNP.20101109_0.99.6.tar.gz
Windows Binary	SNPlocs.Hsapiens.dbSNP.20101109_0.99.6.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	SNPlocs.Hsapiens.dbSNP.20101109_0.99.6.tgz
Package Downloads Report	Download Stats

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