virtualArray

Build virtual array from different microarray platforms

Bioconductor version: Release (2.12)

This package permits the user to combine raw data of different microarray platforms into one virtual array. It consists of several functions that act subsequently in a semi-automatic way. Doing as much of the data combination and letting the user concentrate on analysing the resulting virtual array.

Author: Andreas Heider

Maintainer: Andreas Heider <aheider at trm.uni-leipzig.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("virtualArray")

To cite this package in a publication, start R and enter:

    citation("virtualArray")

Documentation

PDF R Script virtualArray Vignette
PDF virtualArray-016.pdf
PDF   Reference Manual

Details

biocViews Bioinformatics, DataImport, Microarray, MultipleComparisons, OneChannel, Preprocessing, Software
Version 1.4.1
In Bioconductor since BioC 2.10 (R-2.15)
License GPL-3
Depends R (>= 2.15.0), BiocGenerics, methods, plyr, preprocessCore
Imports affy, affyPLM, AnnotationDbi, Biobase, gcrma, GEOquery, graphics, methods, reshape2, stats, utils, tseries, outliers
Suggests affydata, plier, limma, lumi, org.Hs.eg.db
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source virtualArray_1.4.1.tar.gz
Windows Binary virtualArray_1.4.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) virtualArray_1.4.1.tgz
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