siggenes

Multiple testing using SAM and Efron's empirical Bayes approaches

Bioconductor version: Release (2.12)

Identification of differentially expressed genes and estimation of the False Discovery Rate (FDR) using both the Significance Analysis of Microarrays (SAM) and the Empirical Bayes Analyses of Microarrays (EBAM).

Author: Holger Schwender

Maintainer: Holger Schwender <holger.schw at gmx.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("siggenes")

To cite this package in a publication, start R and enter:

    citation("siggenes")

Documentation

PDF	R Script	siggenes Manual
PDF		siggenesRnews.pdf
HTML		R: EBAM specific plot method
HTML		R: EBAM specific print method
HTML		R: EBAM specific summary method
HTML		R: FindA0 specific plot method
HTML		R: FindA0 specific print method
HTML		R: SAM specific identify method
HTML		R: SAM specific plot method
HTML		R: SAM specific print method
HTML		R: SAM specific summary method
PDF		Reference Manual

Details

biocViews	DifferentialExpression, ExonArray, GeneExpression, Microarray, MultipleComparisons, SNP, Software
Version	1.34.0
In Bioconductor since	BioC 1.6 (R-1.11) or earlier
License	LGPL (>= 2)
Depends	methods, Biobase, multtest, splines, graphics
Imports	stats4
Suggests	affy, annotate, genefilter, KernSmooth, scrime (>= 1.2.5)
System Requirements
URL
Depends On Me	KCsmart, oneChannelGUI
Imports Me	charm, GeneSelector, minfi
Suggests Me	GeneSelector, logicFS, XDE

Package Downloads

Package Source	siggenes_1.34.0.tar.gz
Windows Binary	siggenes_1.34.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	siggenes_1.34.0.tgz
Package Downloads Report	Download Stats

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