genefilter: methods for filtering genes from microarray experiments

Bioconductor version: Release (2.12)

Some basic functions for filtering genes

Author: R. Gentleman, V. Carey, W. Huber, F. Hahne

Maintainer: Bioconductor Package Maintainer <maintainer at>

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PDF R Script Additional plots for: Independent filtering increases power for detecting differentially expressed genes, Bourgon et al., PNAS (2010)
PDF R Script Diagnostics for independent filtering
PDF R Script How to find genes whose expression profile is similar to that of specified genes
PDF R Script Using the genefilter function to filter genes from a microarray dataset
PDF   Reference Manual


biocViews Bioinformatics, Microarray, Software
Version 1.42.0
In Bioconductor since BioC 1.6 (R-1.11) or earlier
License Artistic-2.0
Imports AnnotationDbi, annotate(>= 1.13.7), Biobase(>= 1.99.10), graphics, methods, stats, survival
Suggests Biobase(>= 1.99.10), class, hgu95av2.db, methods, tkWidgets, ALL, ROC, DESeq, pasilla
System Requirements
Depends On Me a4Base, Agi4x44PreProcess, cellHTS, cellHTS2, charm, CNTools, GeneMeta, MLInterfaces, simpleaffy
Imports Me affycoretools, affyQCReport, annmap, arrayQualityMetrics, Category, DESeq, DESeq2, eisa, gCMAP, GGBase, GSRI, methyAnalysis, methylumi, phenoTest, Ringo, RNAinteractMAPK, simpleaffy, tilingArray, XDE
Suggests Me AffyExpress, annotate, ArrayTools, BiocCaseStudies, BioNet, Category, categoryCompare, clusterStab, codelink, curatedOvarianData, estrogen, factDesign, ffpe, ffpeExampleData, gageData, GOstats, GSEAlm, GSVA, logicFS, lumi, MAQCsubset, MCRestimate, oligo, oneChannelGUI, phyloseq, pvac, qpgraph, rheumaticConditionWOLLBOLD, rtracklayer, siggenes, SSPA, topGO, VanillaICE, XDE

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Package Source genefilter_1.42.0.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) genefilter_1.42.0.tgz
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