Parses BioPax files and represents them in R

Bioconductor version: Release (2.12)

Parses BioPAX files and represents them in R, at the moment BioPAX level 2 and level 3 are supported.

Author: Frank Kramer

Maintainer: Frank Kramer <dev at frankkramer.de>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF biopax2classgraph.pdf
PDF biopaxsimple.pdf
PDF mergedpw.pdf
PDF R Script rBiopaxParser Vignette
PDF segclock.pdf
PDF wntplot.pdf
PDF   Reference Manual
Text   NEWS


biocViews Software
Version 1.0.0
In Bioconductor since BioC 2.13 (R-2.18)
License GPL (>= 2)
Imports XML
Suggests Rgraphviz, RCurl, graph, RUnit, BiocGenerics
System Requirements
URL https://github.com/frankkramer/rBiopaxParser
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source rBiopaxParser_1.0.0.tar.gz
Windows Binary rBiopaxParser_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) rBiopaxParser_1.0.0.tgz
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