Analysis of Chromosome Conformation Capture and Next-generation Sequencing (3C-seq)

Bioconductor version: Release (2.12)

This package is an implementation of data analysis for the long-range interactions from 3C-seq assay.

Author: Supat Thongjuea, Bergen Center for Computational Science, Norway <supat.thongjuea at bccs.uib.no>

Maintainer: Supat Thongjuea <supat.thongjuea at bccs.uib.no>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script r3Cseq
PDF   Reference Manual
Text   NEWS


biocViews HighThroughputSequencing, Preprocessing, Sequencing, Software
Version 1.6.0
In Bioconductor since BioC 2.9 (R-2.14)
License GPL-3
Depends GenomicRanges, Rsamtools, data.table, rtracklayer, VGAM, qvalue, RColorBrewer, sqldf, methods
Suggests BSgenome.Mmusculus.UCSC.mm9, BSgenome.Hsapiens.UCSC.hg18, BSgenome.Hsapiens.UCSC.hg19
System Requirements
URL http://r3cseq.genereg.net
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source r3Cseq_1.6.0.tar.gz
Windows Binary r3Cseq_1.6.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) r3Cseq_1.6.0.tgz
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