Bump Hunter

Bioconductor version: Release (2.12)

Tools for finding bumps in genomic data

Author: Rafael A. Irizarry, Martin Aryee, Hector Corrada Bravo, Kasper D. Hansen, Harris A. Jaffee

Maintainer: Rafael A. Irizarry <rafa at jhu.edu>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script The bumphunter user's guide
PDF   Reference Manual


biocViews DNAMethylation, Epigenetics, Infrastructure, MultipleComparisons, Software
Version 1.0.2
In Bioconductor since BioC 2.13 (R-2.18)
License Artistic-2.0
Depends R (>= 2.10), IRanges, GenomicRanges, foreach, iterators, methods, parallel
Imports matrixStats, limma, itertools, doRNG
Suggests limma, RUnit, BiocGenerics, doParallel, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene
System Requirements
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source bumphunter_1.0.2.tar.gz
Windows Binary bumphunter_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) bumphunter_1.0.2.tgz
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