VariantTools

Tools for Working with Genetic Variants

Bioconductor version: Release (2.12)

Tools for detecting, filtering, calling, comparing and plotting variants.

Author: Michael Lawrence, Jeremiah Degenhardt, Robert Gentleman

Maintainer: Michael Lawrence <michafla at gene.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("VariantTools")

To cite this package in a publication, start R and enter:

    citation("VariantTools")

PDF	R Script	Introduction to VariantTools
PDF		Reference Manual
Text		NEWS

biocViews	GeneticVariability, Genetics, HighThroughputSequencing, Software
Version	1.2.2
License	Artistic-2.0
Depends	IRanges(>= 1.17.10), GenomicRanges(>= 1.9.52), VariantAnnotation(>= 1.3.20), methods
Imports	IRanges, Rsamtools(>= 1.11.10), GenomicRanges, BiocGenerics, Biostrings, parallel, gmapR(>= 1.1.16), GenomicFeatures, VariantAnnotation, methods, RBGL, graph, Matrix, rtracklayer
Suggests	RUnit, LungCancerLines(>= 0.0.6)
System Requirements
URL
Depends On Me
Imports Me	HTSeqGenie
Suggests Me

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