Quantify and Annotate Short Reads in R

Bioconductor version: Release (2.12)

This package provides a framework for the quantification and analysis of Short Reads. It covers a complete workflow starting from raw sequence reads, over creation of alignments and quality control plots, to the quantification of genomic regions of interest.

Author: Anita Lerch, Dimos Gaiditzis and Michael Stadler

Maintainer: Michael Stadler <michael.stadler at fmi.ch>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script An introduction to QuasR
PDF   Reference Manual
Text   NEWS


biocViews ChIPseq, Genetics, HighThroughputSequencing, Methylseq, Preprocessing, RNAseq, Software
Version 1.0.9
In Bioconductor since BioC 2.13 (R-2.18)
License GPL-2
Depends R (>= 2.15.0), parallel, GenomicRanges, Rbowtie(>= 0.99.0)
Imports methods, zlibbioc, BiocGenerics, IRanges, BiocInstaller, Biobase, Biostrings, GenomicRanges, BSgenome, Rsamtools, GenomicFeatures, ShortRead
Suggests Rsamtools, rtracklayer, Gviz, RUnit
System Requirements
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source QuasR_1.0.9.tar.gz
Windows Binary QuasR_1.0.9.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) QuasR_1.0.9.tgz
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