Segmentation of Bis-seq data

Bioconductor version: Release (2.12)

This is a package for the discovery of regulatory regions from Bis-seq data

Author: Lukas Burger, Dimos Gaidatzis, Dirk Schubeler and Michael Stadler

Maintainer: Lukas Burger <Lukas.Burger at>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script MethylSeekR
PDF   Reference Manual


biocViews DNAMethylation, HighThroughputSequencing, Methylseq, Software
Version 1.0.1
In Bioconductor since BioC 2.13 (R-2.18)
License GPL (>=2)
Depends rtracklayer(>= 1.16.3), parallel (>= 2.15.1), mhsmm (>= 0.4.4)
Imports IRanges(>= 1.16.3), BSgenome(>= 1.26.1), GenomicRanges(>= 1.10.5), geneplotter(>= 1.34.0), graphics (>= 2.15.2), grDevices (>= 2.15.2), parallel (>= 2.15.2), stats (>= 2.15.2), utils (>= 2.15.2)
Suggests BSgenome.Hsapiens.UCSC.hg18
System Requirements
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source MethylSeekR_1.0.1.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) MethylSeekR_1.0.1.tgz
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center