MSnbase

MSnbase: Base Functions and Classes for MS-based Proteomics

Bioconductor version: Release (2.12)

Basic plotting, data manipulation and processing of MS-based Proteomics data

Author: Laurent Gatto <lg390 at cam.ac.uk> with contributions from Guangchuang Yu <guangchuangyu at gmail.com>

Maintainer: Laurent Gatto <lg390 at cam.ac.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("MSnbase")

To cite this package in a publication, start R and enter:

    citation("MSnbase")

Documentation

PDF R Script Base Functions and Classes for MS-based Proteomics
PDF itraqchem.pdf
PDF R Script MSnbase development
PDF R Script MSnbase IO capabilities
PDF plotMzDelta-pride12011.pdf
PDF   Reference Manual
Text   NEWS

Details

biocViews Bioinformatics, Infrastructure, MassSpectrometry, Proteomics, Software
Version 1.8.0
In Bioconductor since BioC 2.8 (R-2.13)
License Artistic-2.0
Depends R (>= 2.10), methods, BiocGenerics(>= 0.1.3), Biobase(>= 2.15.2), ggplot2, mzR
Imports plyr, IRanges, preprocessCore, vsn, grid, reshape2, stats4, affy, impute
Suggests testthat, zoo, knitr, rols, Rdisop
System Requirements
URL
Depends On Me pRoloc, pRolocdata, synapter
Imports Me
Suggests Me isobar, RforProteomics

Package Downloads

Package Source MSnbase_1.8.0.tar.gz
Windows Binary MSnbase_1.8.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) MSnbase_1.8.0.tgz
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center