MotifDb

An Annotated Collection of Protein-DNA Binding Sequence Motifs

Bioconductor version: Release (2.11)

More than 2000 annotated position frequency matrices from five public source, for multiple organisms

Author: Paul Shannon

Maintainer: Paul Shannon <pshannon at fhcrc.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("MotifDb")

To cite this package in a publication, start R and enter:

    citation("MotifDb")

PDF	R Script	MotifDb Overview
PDF		Reference Manual

biocViews	GenomicSequence, MotifAnnotation, Software
Version	1.0.0
In Bioconductor since	BioC 2.11 (R-2.15)
License	Artistic-2.0
Depends	R (>= 2.15.0), methods, IRanges, Biostrings
Imports	BiocGenerics, rtracklayer
Suggests	RUnit, MotIV, seqLogo
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Common Bioconductor workflows include:

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