Motif Identification and Validation

Bioconductor version: Release (2.11)

This package makes use of STAMP for comparing a set of motifs to a given database (e.g. JASPAR). It can also be used to visualize motifs, motif distributions, modules and filter motifs.

Author: Eloi Mercier, Raphael Gottardo

Maintainer: Eloi Mercier <emercier at>, Raphael Gottardo <rgottard at>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script The MotIV users guide
PDF   Reference Manual


biocViews ChIPchip, ChIPseq, GenomicSequence, Microarray, MotifAnnotation, Software
Version 1.14.0
In Bioconductor since BioC 2.6 (R-2.11)
License GPL-2
Depends R (>= 2.10), BiocGenerics(>= 0.1.0)
Imports graphics, grid, methods, BiocGenerics, IRanges(>= 1.13.5), Biostrings(>= 1.24.0), lattice, rGADEM, stats, utils
Suggests rtracklayer
System Requirements
Depends On Me
Imports Me
Suggests Me MotifDb, motifStack

Package Downloads

Package Source MotIV_1.14.0.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) MotIV_1.14.0.tgz
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center