siggenes

Multiple testing using SAM and Efron's empirical Bayes approaches

Bioconductor version: 2.10

Identification of differentially expressed genes and estimation of the False Discovery Rate (FDR) using both the Significance Analysis of Microarrays (SAM) and the Empirical Bayes Analyses of Microarrays (EBAM).

Author: Holger Schwender

Maintainer: Holger Schwender <holger.schw at gmx.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("siggenes")

To cite this package in a publication, start R and enter:

    citation("siggenes")

Documentation

PDF R Script siggenes Manual
PDF R Script siggenesRnews.pdf
PDF   Reference Manual

Details

biocViews DifferentialExpression, ExonArray, GeneExpression, Microarray, MultipleComparisons, SNP, Software
Depends methods, Biobase, multtest, splines, graphics
Imports stats4
Suggests affy, annotate, genefilter, KernSmooth, scrime (>= 1.2.5)
System Requirements
License LGPL (>= 2)
URL
Depends On Me KCsmart, oneChannelGUI
Imports Me charm, GeneSelector, minfi
Suggests Me GeneSelector, logicFS, XDE
Version 1.30.0
Since Bioconductor 1.6 (R-2.1) or earlier

Package Downloads

Package Source siggenes_1.30.0.tar.gz
Windows Binary siggenes_1.30.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary siggenes_1.30.0.tgz
Package Downloads Report Download Stats

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