minfi

Analyze Illumina's 450k methylation arrays

Bioconductor version: 2.10

Tools for analyzing and visualizing Illumina's 450k array data

Author: Kasper Daniel Hansen, Martin Aryee

Maintainer: Kasper Daniel Hansen <khansen at jhsph.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("minfi")

To cite this package in a publication, start R and enter:

    citation("minfi")

Documentation

PDF R Script Minfi Guide
PDF   Reference Manual
Text   NEWS

Details

biocViews DNAMethylation, DataImport, Microarray, Preprocessing, QualityControl, Software, TwoChannel
Depends methods, BiocGenerics(>= 0.1.0), Biobase(>= 2.15.1), lattice, reshape, GenomicRanges
Imports beanplot, RColorBrewer, nor1mix, siggenes, limma, preprocessCore, crlmm, matrixStats, mclust
Suggests IlluminaHumanMethylation450kmanifest(>= 0.2.0), minfiData(>= 0.2.0), Biostrings
System Requirements
License Artistic-2.0
URL
Depends On Me IlluminaHumanMethylation450kmanifest, minfiData
Imports Me
Suggests Me
Version 1.2.0
Since Bioconductor 2.9 (R-2.14)

Package Downloads

Package Source minfi_1.2.0.tar.gz
Windows Binary minfi_1.2.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary minfi_1.2.0.tgz
Package Downloads Report Download Stats

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