Plotting data and annotation information along genomic coordinates

Bioconductor version: 2.10

Genomic data analyses requires integrated visualization of known genomic information and new experimental data. Gviz uses the biomaRt and the rtracklayer packages to perform live annotation queries to Ensembl and UCSC and translates this to e.g. gene/transcript structures in viewports of the grid graphics package. This results in genomic information plotted together with your data.

Author: Florian Hahne, Steffen Durinck, Robert Ivanek, Arne Mueller

Maintainer: Florian Hahne <florian.hahne at novartis.com>

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PDF R Script Gviz users guide
PDF R Script ucsc1.pdf
PDF R Script ucsc2.pdf
PDF   Reference Manual


biocViews Microarray, Software, Visualization
Depends R (>= 2.10.0), methods, grid
Imports IRanges(>= 1.13.19), rtracklayer(>= 1.15.5), lattice, RColorBrewer, biomaRt(>= 2.11.0), GenomicRanges(>= 1.7.14), AnnotationDbi(>= 1.17.11), Biobase(>= 2.15.3), BiocGenerics(>= 0.1.4)
Suggests xtable
System Requirements
License Artistic-2.0
Depends On Me
Imports Me
Suggests Me
Version 1.0.1
Since Bioconductor 2.10 (R-2.15)

Package Downloads

Package Source Gviz_1.0.1.tar.gz
Windows Binary Gviz_1.0.1.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary Gviz_1.0.1.tgz
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