DOI: 10.18129/B9.bioc.systemPipeRdata    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see systemPipeRdata.

systemPipeRdata: NGS workflow templates and sample data

Bioconductor version: 3.9

systemPipeRdata is a helper package to generate with a single command NGS workflow templates that are intended to be used by its parent package systemPipeR. The latter is an environment for building end-to-end analysis pipelines with automated report generation for next generation sequence (NGS) applications such as RNA-Seq, RIBO-Seq, ChIP-Seq, VAR-Seq and many others. Detailed examples for using systemPipeRdata are given in systemPipeR's overview vignette.

Author: Thomas Girke

Maintainer: Thomas Girke <thomas.girke at>

Citation (from within R, enter citation("systemPipeRdata")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script ChIP-Seq Workflow Template
HTML R Script RIBO-Seq Workflow Template
HTML R Script RNA-Seq Workflow Template
HTML R Script systemPipeRdata: NGS workflow templates and sample data
HTML R Script VAR-Seq Workflow Template
PDF   Reference Manual
Text   NEWS


biocViews Alignment, ChIPSeq, Coverage, DataImport, ExperimentData, GeneExpression, GeneSetEnrichment, Genetics, ImmunoOncology, Infrastructure, MethylSeq, QualityControl, RNASeq, SNP, Sequencing
Version 1.12.0
License Artistic-2.0
Depends methods
Imports BiocGenerics
Suggests RUnit, BiocStyle, knitr, rmarkdown, systemPipeR
Depends On Me
Imports Me RNASeqR
Suggests Me
Links To Me
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Source Package systemPipeRdata_1.12.0.tar.gz
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