curatedBreastData

DOI: 10.18129/B9.bioc.curatedBreastData    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see curatedBreastData.

Curated breast cancer gene expression data with survival and treatment information

Bioconductor version: 3.9

Curated human breast cancer tissue S4 ExpresionSet datasets from over 16 clinical trials comprising over 2,000 patients. All datasets contain at least one type of outcomes variable and treatment information (minimum level: whether they had chemotherapy and whether they had hormonal therapy). Includes code to post-process these datasets.

Author: Katie Planey

Maintainer: Katie Planey <katie.planey at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("curatedBreastData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("curatedBreastData")

 

PDF	R Script	Manual
PDF		Reference Manual
Text		NEWS

Details

biocViews	BreastCancerData, CancerData, ExperimentData, ExpressionData, GEO, MicroarrayData, Tissue, TissueMicroarrayData, qPCRData
Version	2.12.0
License	GPL (>= 2)
Depends	R (>= 3.0.0), XML, ggplot2, impute, Biobase, BiocStyle
Imports	methods, stats
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	curatedBreastData_2.12.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/curatedBreastData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/curatedBreastData
Package Short Url	https://bioconductor.org/packages/curatedBreastData/
Package Downloads Report	Download Stats