PasillaTranscriptExpr

DOI: 10.18129/B9.bioc.PasillaTranscriptExpr    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see PasillaTranscriptExpr.

Data package with transcript expression obtained with kallisto from pasilla knock-down RNA-Seq data from Brooks et al.

Bioconductor version: 3.9

Provides kallisto workflow and transcript expression of RNA-Seq data from Brooks et al.

Author: Malgorzata Nowicka [aut, cre]

Maintainer: Malgorzata Nowicka <gosia.nowicka at uzh.ch>

Citation (from within R, enter citation("PasillaTranscriptExpr")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PasillaTranscriptExpr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PasillaTranscriptExpr")

 

PDF R Script Generation of transcript counts from pasilla dataset with kallisto
PDF   Reference Manual
Text   NEWS

Details

biocViews Drosophila_melanogaster_Data, ExperimentData, ExpressionData, GEO, Genome, RNASeqData, SequencingData
Version 1.12.0
License GPL (>= 3)
Depends R (>= 3.3.0)
Imports
LinkingTo
Suggests rtracklayer, BiocStyle, knitr, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me DRIMSeq
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PasillaTranscriptExpr_1.12.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/PasillaTranscriptExpr
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PasillaTranscriptExpr
Package Short Url https://bioconductor.org/packages/PasillaTranscriptExpr/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: