PasillaTranscriptExpr

DOI: 10.18129/B9.bioc.PasillaTranscriptExpr    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see PasillaTranscriptExpr.

Data package with transcript expression obtained with kallisto from pasilla knock-down RNA-Seq data from Brooks et al.

Bioconductor version: 3.9

Provides kallisto workflow and transcript expression of RNA-Seq data from Brooks et al.

Author: Malgorzata Nowicka [aut, cre]

Maintainer: Malgorzata Nowicka <gosia.nowicka at uzh.ch>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PasillaTranscriptExpr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PasillaTranscriptExpr")

 

PDF	R Script	Generation of transcript counts from pasilla dataset with kallisto
PDF		Reference Manual
Text		NEWS

Details

biocViews	Drosophila_melanogaster_Data, ExperimentData, ExpressionData, GEO, Genome, RNASeqData, SequencingData
Version	1.12.0
License	GPL (>= 3)
Depends	R (>= 3.3.0)
Imports
LinkingTo
Suggests	rtracklayer, BiocStyle, knitr, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	DRIMSeq
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	PasillaTranscriptExpr_1.12.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/PasillaTranscriptExpr
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/PasillaTranscriptExpr
Package Short Url	https://bioconductor.org/packages/PasillaTranscriptExpr/
Package Downloads Report	Download Stats