DOI: 10.18129/B9.bioc.HD2013SGI    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see HD2013SGI.

Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping

Bioconductor version: 3.9

This package contains the experimental data and a complete executable transcript (vignette) of the analysis of the HCT116 genetic interaction matrix presented in the paper "Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping" by C. Laufer, B. Fischer, M. Billmann, W. Huber, M. Boutros; Nature Methods (2013) 10:427-31. doi: 10.1038/nmeth.2436.

Author: Bernd Fischer

Maintainer: Bernd Fischer <b.fischer at dkfz.de>

Citation (from within R, enter citation("HD2013SGI")):


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PDF R Script HD2013SGI
PDF   Reference Manual


biocViews CancerData, CellCulture, ColonCancerData, ExperimentData, HighThroughputImagingData, Homo_sapiens_Data, MicrotitrePlateAssayData
Version 1.24.0
License Artistic-2.0
Depends R (>= 2.10.0), RColorBrewer, gplots, geneplotter, splots, limma, vcd, LSD, EBImage
Suggests BiocStyle
SystemRequirements GNU make
Depends On Me
Imports Me
Suggests Me
Links To Me
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Source Package HD2013SGI_1.24.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/HD2013SGI
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HD2013SGI
Package Short Url https://bioconductor.org/packages/HD2013SGI/
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