DOI: 10.18129/B9.bioc.FlowSorted.CordBloodCombined.450k    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see FlowSorted.CordBloodCombined.450k.

Illumina 450k/EPIC data on FACS and MACS umbilical blood cells

Bioconductor version: 3.9

Raw data objects to be used for umbilical cord blood cell proportion estimation in minfi and similar packages. The FlowSorted.CordBloodCombined.450k object is based in samples assayed by Bakulski et al, Gervin et al., de Goede et al., and Lin et al.

Author: Lucas A. Salas [cre, aut], Kristina Gervin [aut], Meaghan C. Jones [aut], Kelly M. Bakulski [ctb], Devin C. Koestler [ctb], John K. Wiencke [ctb], Karl T. Kelsey [ctb], Robert Lyle [ctb], Brock C. Christensen [ctb], Janine Felix [ctb]

Maintainer: Lucas A. Salas <lucas.a.salas.diaz at dartmouth.edu>

Citation (from within R, enter citation("FlowSorted.CordBloodCombined.450k")):


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biocViews ExperimentData, ExperimentHub, Genome, Homo_sapiens_Data, MethylationArrayData, MicroarrayData, Tissue, TissueMicroarrayData
Version 1.0.0
License GPL-3
Depends R (>= 3.6), minfi(>= 1.21.2), SummarizedExperiment, IlluminaHumanMethylation450kanno.ilmn12.hg19(>= 0.2.1), IlluminaHumanMethylationEPICanno.ilm10b4.hg19, ExperimentHub(>= 1.9.1), FlowSorted.Blood.EPIC, utils
Suggests knitr, rmarkdown, testthat, IlluminaHumanMethylation450kmanifest(>= 0.2.0), IlluminaHumanMethylationEPICanno.ilm10b2.hg19
URL https://github.com/immunomethylomics/FlowSorted.CordBloodCombined.450k
BugReports https://github.com/immunomethylomics/FlowSorted.CordBloodCombined.450k/issues.
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