DAPARdata

DOI: 10.18129/B9.bioc.DAPARdata    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see DAPARdata.

Data accompanying the DAPAR and Prostar packages

Bioconductor version: 3.9

Mass-spectrometry based UPS proteomics data sets from Ramus C, Hovasse A, Marcellin M, Hesse AM, Mouton-Barbosa E, Bouyssie D, Vaca S, Carapito C, Chaoui K, Bruley C, Garin J, Cianferani S, Ferro M, Dorssaeler AV, Burlet-Schiltz O, Schaeffer C, Coute Y, Gonzalez de Peredo A. Spiked proteomic standard dataset for testing label-free quantitative software and statistical methods. Data Brief. 2015 Dec 17;6:286-94 and Giai Gianetto, Q., Combes, F., Ramus, C., Bruley, C., Coute, Y., Burger, T. (2016). Calibration plot for proteomics: A graphical tool to visually check the assumptions underlying FDR control in quantitative experiments. Proteomics, 16(1), 29-32.

Author: Samuel Wieczorek and Florence Combes

Maintainer: Samuel Wieczorek <samuel.wieczorek at cea.fr>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DAPARdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DAPARdata")

 

PDF		Exp1_R25_pept.pdf
PDF		Exp1_R25_prot.pdf
PDF		Exp1_R2_pept.pdf
PDF		Exp1_R2_prot.pdf
PDF		Exp2_R100_pept.pdf
PDF		Exp2_R100_prot.pdf
PDF		Exp2_R10_pept.pdf
PDF		Exp2_R10_prot.pdf
PDF		Exp2_R2_pept.pdf
PDF		Exp2_R2_prot.pdf
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentData, MassSpectrometryData
Version	1.14.0
License	GPL-2
Depends	R (>= 3.5)
Imports	utils, knitr, MSnbase
LinkingTo
Suggests	DAPAR, Prostar
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	DAPAR, Prostar
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	DAPARdata_1.14.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/DAPARdata
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/DAPARdata
Package Short Url	https://bioconductor.org/packages/DAPARdata/
Package Downloads Report	Download Stats