## ----style, echo = FALSE, results = 'asis', message=FALSE------------------ BiocStyle::markdown() ## ----load-lib, message = FALSE--------------------------------------------- library(AnnotationHub) ah <- AnnotationHub() ## ----list-ensdb------------------------------------------------------------ query(ah, "EnsDb") ## ----load-ensdb------------------------------------------------------------ qr <- query(ah, c("EnsDb", "intestinalis", "87")) edb <- qr[[1]] ## ----get-genes------------------------------------------------------------- genes(edb) ## ----load-lib2, eval = FALSE----------------------------------------------- # library(ensembldb) # # scr <- system.file("scripts/generate-EnsDbs.R", package = "ensembldb") # source(scr) # ## ----create-dbs, eval = FALSE---------------------------------------------- # createEnsDbForSpecies(ens_version = 87, user = "someuser", host = "localhost", # pass = "somepass")