BSgenome.Mmusculus.UCSC.mm10

DOI: 10.18129/B9.bioc.BSgenome.Mmusculus.UCSC.mm10    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see BSgenome.Mmusculus.UCSC.mm10.

Full genome sequences for Mus musculus (UCSC version mm10)

Bioconductor version: 3.9

Full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm10, Dec. 2011) and stored in Biostrings objects.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BSgenome.Mmusculus.UCSC.mm10")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	AnnotationData, BSgenome, Genetics, Mus_musculus
Version	1.4.0
License	Artistic-2.0
Depends	BSgenome(>= 1.33.5)
Imports	BSgenome
LinkingTo
Suggests	TxDb.Mmusculus.UCSC.mm10.knownGene
SystemRequirements
Enhances
URL
Depends On Me	BSgenome.Mmusculus.UCSC.mm10.masked, DOQTL
Imports Me	BSgenome.Mmusculus.UCSC.mm10.masked, GeneStructureTools, trena
Suggests Me	AneuFinder, BSgenome, gcapc, GenomicRanges, InPAS, MiRaGE, NADfinder, RCAS, scmeth
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BSgenome.Mmusculus.UCSC.mm10_1.4.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Package Short Url	https://bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm10/
Package Downloads Report	Download Stats